Calculate temporal metrics for spread of a single cluster.
Usage
intra_cluster_duration_metrics(seqs, seq2pt, dates)
Arguments
- seqs
Vector of sequence IDs in the cluster
- seq2pt
Named vector mapping sequence IDs to patient IDs
- dates
Vector of isolate dates named by sequence IDs
Value
Named numeric vector with cluster_start_date,
time_to_first_acquisition, time_to_last_acquisition and
median_time_to_acquisition.